Publications

2016
  • Garnier, M., Bougaran, G., Pavlovic, M., Berard, J.B., Carrier, G., Charrier, A., Le Grand, F., Lukomska, E., Rouxel, C., Schreiber, N., Cadoret, J.P., Rogniaux, H., Saint-Jean, B. (2016). Use of a lipid rich strain reveals mechanisms of nitrogen limitation and carbon partitioning in the haptophyte Tisochrysis lutea. Algal Research, 20, 229-248. http://doi.org/10.1016/j.algal.2016.10.017
  • Le Chevanton, M., Garnier, M., Lukomska, E., Schreiber, N., Cadoret, J.P., Saint-Jean, B. and Bougaran, G. (2016). Effects of nitrogen limitation on Dunaliella sp.–Alteromonas sp. interactions: from mutualistic to competitive relationships.. Front. Mar. Sci.3:123. doi: 10.3389/fmars.2016.00123
  • Thiriet-Rupert, S., Carrier, G., Chenais, B., Trottier, C., Bougaran, G., Cadoret, J.P., Schoefs, B., Saint-Jean, B. (2016). Transcription factors in microalgae: genome-wide prediction and comparative analysis. Bmc Genomics, 17(282), 1-16.  doi: s12864-016-2610-9 , Open Access version: http://archimer.ifremer.fr/doc/00333/44403/
2015
  • Juin, C., Bonnet, A., Nicolau, E., Bérard, J.B., Devillers, R., Thiéry, V., Cadoret, J.P. and Picot, L. (2015) UPLC-MSE Profiling of Phytoplankton Metabolites: Application to the Identification of Pigments and Structural Analysis of Metabolites in Porphyridium purpureum. Mar. Drugs, 13(4), 2541-2558; doi:10.3390/md13042541
  • Da Costa, F., Petton, B., Mingant, Chr., Bougaran, G., Rouxel, C., Quere, Cl., Wikfors, G.H., Soudant, Ph. and Robert, R. (2015). Influence of one selected Tisochrysis lutea strain rich in lipids on Crassostrea gigas larval development and biochemical composition.  Aquaculture Nutrition  doi:10.1111/anu.12301
  • Charrier, A.,Bérard, J.B., Bougaran, G., Carrier, G., Lukomska, E., Schreiber, N., Fournier, F., Charrier, A.F., Rouxel, C., Garnier, M., Cadoret, J.P. and Saint-Jean, B. (2015). High-affinity nitrate/nitrite transporter genes (Nrt2) in Tisochrysis lutea: identification and expression analyses reveal some interesting specificities of Haptophytamicroalgae. Physiol. Plant. doi: 10.1111/ppl.12330

2014

  • Bougaran, G. (2014). Mechanisms of co-limitation between nitrogen and phosphorus in the microalgae Tisochrysis lutea. PhD Thesis, Université de Nantes. Ecole doctorale VENAM. Open Access version:  http://archimer.ifremer.fr/doc/00293/40397/
  • Moustafa Yasser, T.A., Bougaran, G., Callier, M., Blancheton, J.P. (2014). Bio-physiological response of biofilter algal candidate Ulva sp. to different nitrogen forms and fluxes. International journal of plant physiology and biochemistry, 6(7), 71-79. Open Access version:  http://archimer.ifremer.fr/doc/00251/36259/
  • Juin, C., Chérouvrier, J.R., Thiéry, V., Gagez, A. L., Bérard, J.B., Joguet, N., Kaas, R., Cadoret, J.P., Picot, L. (2014). Microwave-Assisted Extraction of Phycobiliproteins from Porphyridium purpureum. Appl Biochem Biotechnol.  doi: 10.1007/s12010-014-1250-2.
  • Muñoz-Tamayo, R., Martinon, P., Bougaran, G., Mairet, F., Bernard, O. (2014). Getting the most out of it: Optimal experiments for parameter estimation of microalgae growth models. Journal of Process Control. 2014 June, 24(6), 991–1001. doi: 10.1016/j.jprocont.2014.04.021.
  • Garnier, M., Carrier, G., Rogniaux, H., Nicolau, E., Bougaran, G., Saint-Jean, B., Cadoret, J.P. (2014). Comparative proteomics reveals proteins impacted by nitrogen deprivation in wild-type and high lipid-accumulating mutant strains of Tisochrysis lutea. Journal of proteomics. 2014 Feb 27. doi: 10.1016/j.jprot.2014.02.022.
  • Carrier, G., Garnier, M., Le Cunff, L., Bougaran, G., Probert, I., De Vargas, C., Corre, E., Cadoret, J.P. and Saint-Jean, B. (2014).Comparative Transcriptome of Wild Type and Selected Strains of the Microalgae Tisochrysis lutea Provides Insights into the Genetic Basis, Lipid Metabolism and the Life Cycle.  PLoS One.2014 Jan 29, 9(1). doi: 10.1371/journal.pone.0086889

2013

  • Juin, C., Thiery, V., Cadoret, J.P., Picot, L. (2013). Towards the Clinical Use of Phytoplankton Carotenoid Pigments to Cure Cancer. Oceanography 1: e105. doi:10.4172/2332-2632.1000e105
  • Montagne, X., Porot, P., Aymard, C., Querleu, C., Bouter, A., Lorne, D., Cadoret, J.P., Lombaert-Valot, I., Petillon, O. (2013). Algogroup: Towards a Shared Vision of the Possible Deployment of Algae to Biofuels. Oil & Gas Science And Technology – Rev. Ifp Energies Nouvelles, 1-24; doi: 10.2516/Ogst/2013164
  • Baudelet, P.H., Gagez, A.L., Berard, J.B., Juin, C., Bridiau, N., Kaas, R., Thiery, V., Cadoret, J.P., Picot, L. (2013).  Antiproliferative Activity of Cyanophora paradoxa Pigments in Melanoma, Breast and Lung Cancer Cells. Mar. Drugs, 11(11), 4390-4406; doi: 10.3390/md11114390
  • Marchetti, J., Bougaran, G., Jauffrais, T., Lefebvre, S., Rouxel, C., Saint-Jean, B., Lukomska, E., Robert, R., Cadoret, J.P. (2013). Effects of blue light on the biochemical composition and photosynthetic activity of Isochrysis sp. (T-iso). Journal Of Applied Phycology, 25(1), 109-119. doi: 10.1007/s10811-012-9844-y
  • Le Chevanton, M., Garnier,  M., Bougaran, G., Schreiber, N., Lukomska, E., Bérard, J.B., Fouilland, E., Bernard, O., Cadoret J.P., (2013). Screening and selection of growth-promoting bacteria for Dunaliella cultures. Algal Research 2 (2013) 212-222. doi: 10.1016/j.algal.2013.05.003

2012

  • Gagez, A.L., Valerie Thiery, V., Pasquet, V, Cadoret, J.P. & Picot, L., (2012). Epoxycarotenoids and Cancer. Review. Current Bioactive Compounds8(2): 109-141. doi: 10.2174/157340712801784787
  • Minouni, V., Ulmann, L., Pasquet, V., Mathieu, M., Picot, L., Bougaran, G., Cadoret, J.P., Morant-Manceau, A. & Schoefs, B., (2012). The Potential of Microalgae for the Production of Bioactive Molecules of Pharmaceutical Interest. Current Pharmaceutical Biotechnology, 13(15), 2733-2750. Open Access version
  • Serive, B., Kaas, R., Bérard, J.B., Pasquet, V., Picot, L. & Cadoret, J.P. (2012). Selection and optimisation of a method for efficient metabolites extraction from microalgae. Bioresource Technology, 124, 311–320. PDF
  • Jauffrais, T., Kilcoyne, J., Séchet, V., Herrenknecht, C., Truquet, P., Hervé, F., Bérard, J.B., Nulty, C., Taylor, S., Tillmann, U., Miles, C.O. & Hess, P. (2012). Production and Isolation of Azaspiracid-1 and -2 from Azadinium spinosum Culture in Pilot Scale Photobioreactors. Marine Drugs, 10(6), 1360-1382. PDF
  • Vasseur, Ch.,  Bougaran, G., Garnier, M., Hamelin, J., Leboulanger, Ch., Le Chevanton, M., Mostajir, B., Sialve, B., Steyer, J.Ph. & Fouilland, E. (2012). Carbon conversion efficiency and population dynamics of a marine algae-bacteria consortium growing on simplified synthetic digestate: First step in a bioprocess coupling algal production and anaerobic digestion. Bioresource technology 119, 79-87. PDF
  • Bougaran, B., Rouxel, C., Dubois, N., Kaas, R., Grouas, S., Lukomska, E., Le Coz, J.R. & Cadoret, J.P. (2012). Enhancement of Neutral Lipid Productivity in the Microalga Isochrysis Affinis Galbana (T-Iso) by a Mutation-Selection Procedure. Biotechnology and Bioengineering. 2012 Nov;109(11):2737-45. doi: 10.1002/bit.24560. Epub 2012 Jun 4.PDF
  • Marchetti,J., Bougaran, G., Le Dean, L., Mégrier, C., Lukomska, E., Kaas, R., Olivo, E., Baron, R., Robert, R. & Cadoret, J.P. (2012). Optimizing conditions for the continuous culture of Isochrysis affinis galbana relevant to commercial hatcheries. Aquaculture, 326-329(0), 106-115. PDF

2011

  • Bendif, E.M., Probert, I., Hervé, A., Billard, C., Goux, D., Lelong, C., Cadoret, J.P. & Véron, B. (2011). Integrative Taxonomy of the Pavlovophyceae (Haptophyta): A reassessment. Protist, 162(5), 738-61. PDF 
  • Buffet, P.E., Tankoua, O.F., Pan, J.F., Berhanu, D., Herrenknecht, C., Poirier, L., Amiard-Triquet, C., Amiard, J.C., Berard, J.B., Risso, C., Guibbolini, M., Roméo, M., Reip, P., Valsami-Jones, E. & Mouneyrac, C. (2011). Behavioural and biochemical responses of two marine invertebrates Scrobicularia plana and Hediste diversicolor to copper oxide nanoparticles. Chemosphere, 84(1),166-74. PDF
  • Pasquet, V., Morisset, P., Ihammouine, S., Chepied, A., Aumailley, L., Berard, J.B., Serive, B., Kaas, R., Lanneluc, I., Thiery, V., Lafferriere, M., Piot, J.M., Patrice, T., Cadoret, J.P. & Picot, L. (2011). Antiproliferative activity of violaxanthin isolated from bioguided fractionation of Dunaliella Tertiolecta extracts. Mar. Drugs, 9(5), 819-831. PDF
  • Baïet, B., Burel, C., Saint-Jean, B., Louvet, R., Menu-Bouaouiche, L., Kiefer-Meyer, M.C., Mathieu-Rivet, E., Lefebvre, T., Castel, H., Carlier, A., Cadoret, J.P., Lerouge, P. & Bardor, M. (2011). N-Glycans of Phaeodactylum tricornutum diatom and functional characterization of its N-Acetylglucosaminyltransferase I enzyme. Journal of Biological Chemistry, 286(8), 6152-6164. PDF
  • Pasquet, V., Chérouvrier, J.R., Farhat, F., Thiéry, V., Piot, J.M., Berard, J.B., Kaas, R., Serive, B., Patrice, T., Cadoret, J.P. & Picot, L. (2011). Study on the microalgal pigments extraction process: Performance of microwave assisted extraction. Process Biochemistry, 46, 59–67. PDF

2010

  • Baron, R., Vauchel, P., Kaas, R., Arhaliass, A. & Legrand, J. (2010). Dynamical modelling of a reactive extrusion process: Focus on residence time distribution in a fully intermeshing co-rotating twin-screw extruder and application to an alginate extraction process. Chemical Engineering Science, 65(10), 3313-3321. PDF
  • Maheswari, U., Jabbari, K., Petit, J.L., Porcel, B.M., Allen, A.E, Cadoret, J.P., De Martino, A., Heijde, M., Kaas, R., La roche, J., Lopez, P.J., Martin-Jezequel, V., Meichenin, A., Mock, T., Schnitzler Parker, M., Vardi, A., Armbrust, E.V., Weissenbach, J., Katinka, M. & Bowler, Ch. (2010). Digital expression profiling of novel diatom transcripts provides insight into their biological functions. Genome biology, 11(8), R85. PDF
  • Bougaran, G., Bernard, O. & Sciandra, A. (2010). Modeling continuous cultures of microalgae colimited by nitrogen and phosphorus.Journal of Theoretical Biology, 265, 443–454. PDF

2009

  • Henriquez, V., Gimpel, J., Escobar, C., Gutierrez, C., Cadoret, J.P., Marshall, S. (2009). Identification of microalgal chloroplast sequences: genetic tools to develop microalgal heterologous expression systems for aquaculture applications. New Biotechnology 01/2009; 25. doi: 10.1016/j.nbt.2009.06.100
  • Loubière, K., Olivo, E., Bougaran, G., Pruvost, J., Robert, R. & Legrand, J. (2009). A new photobioreactor for continuous microalgal production in hatcheries based on external-loop airlift and swirling flow. Biotechnology and Bioengineering, 102(1), 132-147. PDF
  • Vauchel, P., Leroux, K., Kaas, R., Arhaliass, A., Baron, R. & Legrand, J. (2009). Kinetics modeling of alginate alkaline extraction from Laminaria digitata. Bioresource Technology, 100(3), 1291-1296. PDF

2008

  • Bowler, Ch., Allen, A. E., Badger, J. H., Grimwood, J., Jabbari, K., Kuo, A., Devi U., Martens, C., Maumus, F., Otillar, R. P., Rayko, E., Salamov, A., Vandepoele, K., Beszteri, B., Gruber, A., Heijde, M., Katinka, M., Mock, T., Valentin, K., Verret, F., Berges, J. A., Brownlee, C., Cadoret, J.P., Chiovitti, A., Choi, C. J., Coesel, S., De Martino , A., Detter, J. Ch., Durkin, C., Falciatore, A., Fournet, J., Haruta, M., Huysman, M. J. J,, Jenkins, B. D., Jiroutova, K., Jorgensen, R. E., Joubert, Y., Kaplan, A., Kröger, N., Kroth, P. G., La Roche , J., Lindquist, E., Lommer, M., Martin–Jézéquel, V., Lopez, P. J., Lucas, S., Mangogna, M., McGinnis, K., Medlin, L. K., Montsant, A., Oudot–Le Secq , M., Napoli, C., Obornik, M., Schnitzler Parker , M., Petit, J., Porcel, B. M., Poulsen, N., Robison, M., Rychlewski, L., Rynearson, T. A., Schmutz, J., Shapiro, H., Siaut, M., Stanley, M., Sussman, M. R., Taylor, A. R., Vardi, A., von Dassow , P., Vyverman, W., Willis, A., Wyrwicz, L. S., Rokhsar, D. S., Weissenbach, J., Armbrust, E. V., Green, B. R., Van de Peer, Y. & Grigoriev, I. V. (2008). The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature, 456, 239-244. PDF
  • Vauchel, P., Kaas, R., Arhaliass, A., Baron, R. & Legrand, J. (2008). A new process for extracting alginates from Laminaria digitata: Reactive extrusion. Food and Bioprocess Technology, 1(3), 297-300. PDF
  • Cadoret, J.P. & Bernard, O. (2008). La production de biocarburant lipidique avec des microalgues: Promesses et défis. Journal de la Société de Biologie, 202 (3), 201-211. PDF
  • Cadoret, J.P., Bardor, M., Lerouge, P., Cabigliera, M., Henriquez, V. & Carlier, A. (2008). Producing recombinant commercial proteins. Médecine/Science, 24, 375-382. PDF, supplément
  • Vauchel, P., Arhaliass, A., Legrand, J., Kaas, R. & Baron, R. (2008). Decrease in dynamic viscosity and average molecular weight of alginate from Laminaria digitata during alkaline extraction. Journal of Phycology, 44(2), 515–517. PDF

2007

  • Richert, L., Golubic, S., Le Guedes, R., Herve, A. & Payri, C. (2007). Cyanobacterial populations that build 'kopara' microbial mats in Rangiroa, Tuamotu Archipelago, French Polynesia. European Journal of Phycology, 41(3), 259-279. PDF

2006

  • Moreau, D., Tomasoni, C., Jacquot, C., Kaas, R., Le Guedes, R., Cadoret, J.P., Muller-Feuga, A., Kontiza, L., Vagias, C., Roussis, V. & Roussakis, C. (2006). Cultivated microalgae and the carotenoid fucoxanthin from Odontella aurita as potent anti proliferative agents in bronchopulmonary and epithelial cell lines. Environmental Toxicology And Pharmacology, 22(1), 97 103. PDF 

2005

  • Richert, L., Golubic, S., Le Guedes, R., Ratiskol, J., Payri, C. & Guezennec, J. (2005). Characterization of exopolysaccharides produced by cyanobacteria isolated from polynesian microbial mats. Current Microbiology, 51(6), 379-384. PDF
  • Givernaud, Th., Scali, N., Barbaroux, O., Orbi, A., Selmaoui, Y., Rezzoum, N., Mouradi, A. & Kaas, R. (2005). Mapping and estimation of biomass of an harvested population of Gelidium sesquipedale along the Atlantic coast of Morocco. Phycologia, 44(1), 66-71. PDF 

2004

  • Muller-Feuga, A., Le Guedes, R. & Le Déan, L. (2004). Cell weight kinetics simulation in chemostat and batch culture of the rhodophyte Porphyridium cruentum. Biotech. Bioeng., 82(6), 759-766. PDF
  • Pruvost, J., Legrand, J., Legentilhomme, P. & Muller-Feuga, A. (2004). Effect of inlet type on shear stress and mixing in an annular photobioreactor involving a swirling decaying flow. Can. J. Chem. Eng., 82(3), 495-503. PDF
  • Robert, R., Chretiennot-Dinet, MJ., Kaas, R., Martin-Jezequel, V., Moal, J., Le Coz, JR., Nicolas, J.L., Bernard, E., Connan, J.P., Le Dean, L., Le Gourrierec, G., Leroy, B. & Quere, C. (2004). Improvement of phytoplankton culture in mollusc hatcheries: Characterisation of microalgae used as aquaculture feeds. Ifremer, Plouzané (France). 145 pp. PDF 

2003

  • Bougaran, G., Le Dean, L., Lukomska, E., Kaas, R. & Baron, R. (2003). Transient initial phase in continuous culture of Isochrysis galbana affinis Tahiti. Aquat Living Resour, 16(4), 389-394. PDF
  • Muller-Feuga, A., Le Guedes, R. & Pruvost, J. (2003). Benefits and limitations of modeling for optimization of Porphyridium cruentum cultures in an annular photobioreactor. J. Biotechnol., 2(103), 153-163. PDF 
  • Muller-Feuga, A., Le Guedes, R., Le Dean, L., Pruvost, J., Legentilhomme, P. & Legrand, J. (2003). Swirling flow implementation in a photobioreactor for batch and continuous cultures of Porphyridium cruentum. Biotechn. Bioeng., 85(5), 544-551. PDF

2002

  • Pruvost, J., Legrand, J., Legentilhomme, P. & Muller-Feuga, A. (2002). Simulation of Microalgae Growth in Limiting Light Conditions: Flow Effect. AIChE Journal, 5(48), 1109-1120. PDF

2000

  • Crepineau, F., Roscoe, T., Kaas, R., Kloareg, B. & Boyen, C. (2000). Characterisation of complementary DNAs from the expressed sequence tag analysis of life cycle stages of Laminaria digitata (Phaeophyceae). Plant Molecular Biology, 43(4), 503-513. PDF